STARmap&MERFISH Mouse Cell-gene Pair Dataset

This dataset is from the paperTissue module discovery in single-cell-resolution spatial transcriptomics data via cell-cell interaction-aware cell embedding", two of the mouse cell-gene pair datasets used: the MERFISH mouse dataset and the STARmap mouse dataset.

This study preprocessed two datasets:

• For the STARmap mouse PLA dataset, the normalized cell-gene matrix was provided by the original paper and log-transformed.

• For the MERFISH mouse AB dataset, the gene count matrix was obtained from the CELL x GENE library. The total counts per cell were normalized to 10,000, and the normalized cell-gene matrix was log-transformed.