HyperAIHyperAI

Command Palette

Search for a command to run...

TOMG-Bench: Evaluating LLMs on Text-based Open Molecule Generation

Jiatong Li Junxian Li Yunqing Liu Dongzhan Zhou Qing Li

Abstract

In this paper, we propose Text-based Open Molecule Generation Benchmark(TOMG-Bench), the first benchmark to evaluate the open-domain moleculegeneration capability of LLMs. TOMG-Bench encompasses a dataset of three majortasks: molecule editing (MolEdit), molecule optimization (MolOpt), andcustomized molecule generation (MolCustom). Each task further contains threesubtasks, with each subtask comprising 5,000 test samples. Given the inherentcomplexity of open molecule generation, we have also developed an automatedevaluation system that helps measure both the quality and the accuracy of thegenerated molecules. Our comprehensive benchmarking of 25 LLMs reveals thecurrent limitations and potential areas for improvement in text-guided moleculediscovery. Furthermore, with the assistance of OpenMolIns, a specializedinstruction tuning dataset proposed for solving challenges raised byTOMG-Bench, Llama3.1-8B could outperform all the open-source general LLMs, evensurpassing GPT-3.5-turbo by 46.5% on TOMG-Bench. Our codes and datasets areavailable through https://github.com/phenixace/TOMG-Bench.


Build AI with AI

From idea to launch — accelerate your AI development with free AI co-coding, out-of-the-box environment and best price of GPUs.

AI Co-coding
Ready-to-use GPUs
Best Pricing

HyperAI Newsletters

Subscribe to our latest updates
We will deliver the latest updates of the week to your inbox at nine o'clock every Monday morning
Powered by MailChimp