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Genexpressionsanalyse

Analyse und Vorhersage der Genexpressionslevel aus genomischen Daten, wodurch Muster der Genaktivität unter verschiedenen Bedingungen und Zelltypen aufgedeckt werden.

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Insgesamt 22 Modelle

Benchmarks

Her2ST
Norman
ISA dataset
cSCC
Adamson
GM12878
HEST-1k
K562
STNet
AVEC 2014
Dixit
PURE
Replogle
Replogle2022_K562
Replogle2022_Rep1
SCC
SJTU-PCQA
Skin
ST-Net
10D Gaussian mixture
10D Multi-modal
AVEC 2013
BH-rPPG
big-bench
Breast
Equipleth
FluoMix
Kidney
Lung
Lymph
Norman2019
STImage-1K4M
UBFC-rPPG
UKBB
10x_BA
10x_HBC
20D Gaussian
4D Ring
690 ChIP-seq
GCBLANE
6D Multi-modal
6D Unimodal
AgeDB (RNC Linear Probe)
AgeDB (Scratch)
AgeDB-DIR
Alex
BASICS
BBBC006
BioGRID (human)
BioGRID(yeast)
GNE
BMMCatac2gex 2022
BMMCmultiome 2021
BoneTo326K
Brain Cancer Visium HD
Breast Cancer Visium HD
Breast Visium-1
Breast Visium-2
Breast Visium-3
Brisbane Pre
Brisbane Raw
BUAA-MIHR
C. elegans
Cell linesZhu11K
COHFACE
Colorectum
combinatorial genetic perturbation dataset
Concrete Compressive Strength
CortexZhu45K
cSCC Dataset
Diffusion-convection
E. coli
Equipleth→RHB
FISH
FocusPath
gue
DNABERT-2-117M
HBC
HER+
HER2+
HER2+ Dataset
Horlbeck Jurkat
Horlbeck K562
Human skin slices
Humans
IC50
IDC
IHDP
IMDB-WIKI-DIR
Joule heating
Kidney Visium
Kyiv Pre
Kyiv Raw
law school dataset
Lymph Node
M1S1
M2S1
MERFISH
Metasurface
MICrONS
MMPD
Mouse hippocampus Slide-seqV2
Mouse liver slices
Neg-Entropy
Neg-Log
News
osmFISH
Pancreas1
Pancreas2
Parabolic
Parkinson (Motor)
Parkinson (Total)
QAOA
Random
Random Size Zero Shots
RHB
RHB→Equipleth
S. cerevisiae
sci-Plex4
sciplex3
SENSORIUM
Simpson
SKCM
skinST
SnapUGC
spatial transcriptomics dataset
speechocean762
STARmap
Stereo-seq MOSTA
STNET Dataset
STS-B-DIR
Super Conductivity
TCGA-BRCA
TCGA-KIRC
TCGA-LUAD
Trotter
Trotter Step Zero Shots
UBFC
Unseen Obs
VIPL-HR
Visium BC
Wine Quality
WPC